libStatGen Software  1
glfEntry Struct Reference
Collaboration diagram for glfEntry:

Public Member Functions

glfEntryoperator= (glfEntry &rhs)
 

Public Attributes

unsigned char refBase:4
 "XACMGRSVTWYHKDBN"[ref_base] gives the reference base
 
unsigned char recordType:4
 
unsigned int offset
 offset of this record from the previous one, in bases
 
unsigned depth:24
 log10 minimum likelihood * 10 and the number of mapped reads
 
unsigned minLLK:8
 
unsigned char mapQuality
 root mean squared maximum mapping quality for overlapping reads
 
union {
   unsigned char   lk [10]
 log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT
 
   glfIndel   indel
 
}; 
 

Detailed Description

Definition at line 42 of file glfHandler.h.


The documentation for this struct was generated from the following files: