--- daligner.orig/Makefile
+++ daligner/Makefile
@@ -5,34 +5,34 @@
 all: $(ALL)
 
 daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm
+	gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS)
 
 HPCdaligner: HPCdaligner.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o HPCdaligner HPCdaligner.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o HPCdaligner HPCdaligner.c DB.c QV.c -lm $(LDFLAGS)
 
 HPCmapper: HPCmapper.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o HPCmapper HPCmapper.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o HPCmapper HPCmapper.c DB.c QV.c -lm $(LDFLAGS)
 
 LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS)
 
 LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS)
 
 LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS)
 
 LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS)
 
 LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS)
 
 LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS)
 
 LAupgrade.Dec.31.2014: LAupgrade.Dec.31.2014.c align.c align.h DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm
+	gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm $(LDFLAGS)
 
 clean:
 	rm -f $(ALL)
